Genome Spread Counts

This audit looks at the spread distance between codons. It shows how often codons repeat after each other.

Audit Purpose

To make sure that the code for scanning the genome is running correctly.

To display a summary of the entire genome for the first 3 frames.

This time a look at the average distance between like codons.

High adjacency codon sequences are not indicative of language.

Test Setup

Using the sense strand in the 5' direction. Using reference frames 0 and 1 and 2.

A spread as defined here is the distance from the same codon previously in a chromosome.

So a spread of 1 indicates a codon immediately follows an earlier copy of the same codon.

The best spread is the most common spread found throughout the genome.

The avg is the average spread between repeats of codons.

The spreads: within boxes in the following report are the top 20 spreads and the number of occurrences at each spread.

Results

Sorted by normal codon table order.

Discussion

Long runs of single codons are not likely carrying language.

The TTT codon above is one of the most common, but at only 3 percent of the genome are TTT followed by TTT.

Still lots of room.